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Special Section
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1
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Title Page / Table of Contents
Cytogenet Genome Res 2005;110:1-6 (DOI:10.1159/000087277)
Article (PDF 77 KB)
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Paper
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7
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Preface
Volff, J.-N.
Cytogenet Genome Res 2005;110:7-0 (DOI:10.1159/000087278)
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Retrotransposable Elements, Retrotransposition and Genome Evolution
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8
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Echoes from the past – are we still in an RNP world?
Brosius, J.
Cytogenet Genome Res 2005;110:8-24 (DOI:10.1159/000084934)
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Article (PDF 529 KB)
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25
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What transposable elements tell us about genome organization and evolution: the case of Drosophila
Biémont, C. ;
Vieira, C.
Cytogenet Genome Res 2005;110:25-34 (DOI:10.1159/000084935)
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Article (PDF 143 KB)
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35
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LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling
Dewannieux, M. ;
Heidmann, T.
Cytogenet Genome Res 2005;110:35-48 (DOI:10.1159/000084936)
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Article (PDF 464 KB)
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49
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Hybrid genome evolution by transposition
Fontdevila, A.
Cytogenet Genome Res 2005;110:49-55 (DOI:10.1159/000084937)
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Article (PDF 167 KB)
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56
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Reverse transcription in genome evolution
Mourier, T.
Cytogenet Genome Res 2005;110:56-62 (DOI:10.1159/000084938)
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Article (PDF 229 KB)
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63
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Genome evolution mediated by Ty elements in Saccharomyces
Garfinkel, D.J.
Cytogenet Genome Res 2005;110:63-69 (DOI:10.1159/000084939)
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Article (PDF 326 KB)
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70
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Happy together: the life and times of Ty retrotransposons and their hosts
Lesage, P. ;
Todeschini, A.L.
Cytogenet Genome Res 2005;110:70-90 (DOI:10.1159/000084940)
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Article (PDF 493 KB)
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91
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LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model
Vitte, C. ;
Panaud, O.
Cytogenet Genome Res 2005;110:91-107 (DOI:10.1159/000084941)
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Article (PDF 430 KB)
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108
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How repeated retroelements format genome function
von Sternberg, R. ;
Shapiro, J.A.
Cytogenet Genome Res 2005;110:108-116 (DOI:10.1159/000084942)
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Article (PDF 252 KB)
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Retrotransposable Elements, Chromosomes and Chromatin
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117
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Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons
Jurka, J. ;
Kohany, O. ;
Pavlicek, A. ;
Kapitonov, V.V. ;
Jurka, M.V.
Cytogenet Genome Res 2005;110:117-123 (DOI:10.1159/000084943)
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Article (PDF 242 KB)
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124
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Heterochromatic distribution of HeT-A- and TART-like sequences in several Drosophila species
Berloco, M. ;
Fanti, L. ;
Sheen, F. ;
Levis, R.W. ;
Pimpinelli, S.
Cytogenet Genome Res 2005;110:124-133 (DOI:10.1159/000084944)
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Article (PDF 977 KB)
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134
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Retroelements: tools for sex chromosome evolution
Steinemann, S. ;
Steinemann, M.
Cytogenet Genome Res 2005;110:134-143 (DOI:10.1159/000084945)
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Article (PDF 580 KB)
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144
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Retrotransposable elements on the W chromosome of the silkworm, Bombyx mori
Abe, H. ;
Mita, K. ;
Yasukochi, Y. ;
Oshiki, T. ;
Shimada, T.
Cytogenet Genome Res 2005;110:144-151 (DOI:10.1159/000084946)
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Article (PDF 172 KB)
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152
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HeT-A and TART, two Drosophila retrotransposons with a bona fide role in chromosome structure for more than 60 million years
Casacuberta, E. ;
Pardue, M.-L.
Cytogenet Genome Res 2005;110:152-159 (DOI:10.1159/000084947)
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Article (PDF 248 KB)
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160
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I element distribution in mitotic heterochromatin of Drosophila melanogaster reactive strains: identification of a specific site which is correlated with the reactivity levels
Dimitri, P. ;
Bucheton, A.
Cytogenet Genome Res 2005;110:160-164 (DOI:10.1159/000084948)
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Article (PDF 238 KB)
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165
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Transposable elements as artisans of the heterochromatic genome in Drosophila melanogaster
Dimitri, P. ;
Corradini, N. ;
Rossi, F. ;
Mei, E. ;
Zhimulev, I.F. ;
Vernì, F.
Cytogenet Genome Res 2005;110:165-172 (DOI:10.1159/000084949)
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Article (PDF 277 KB)
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173
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Fixed and unstable I-related transposable elements in heterochromatin of Drosophila melanogaster
Junakovic, N. ;
Fortunati, D. ;
Soriano, S.
Cytogenet Genome Res 2005;110:173-180 (DOI:10.1159/000084950)
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Article (PDF 2037 KB)
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181
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ERVK9, transposons and the evolution of MHC class I duplicons within the alpha-block of the human and chimpanzee
Kulski, J.K. ;
Anzai, T. ;
Inoko, H.
Cytogenet Genome Res 2005;110:181-192 (DOI:10.1159/000084951)
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Article (PDF 542 KB)
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193
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Polymorphic Alu insertions within the Major Histocompatibility Complex class I genomic region: a brief review
Kulski, J.K. ;
Dunn, D.S.
Cytogenet Genome Res 2005;110:193-202 (DOI:10.1159/000084952)
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Article (PDF 230 KB)
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203
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A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize
Theuri, J. ;
Phelps-Durr, T. ;
Mathews, S. ;
Birchler, J.
Cytogenet Genome Res 2005;110:203-208 (DOI:10.1159/000084953)
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Article (PDF 170 KB)
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Retrotransposition and Its Regulation
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209
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Transcriptional interference mediated by retrotransposons within the genome of their host: lessons from alleles of the white gene from Drosophila melanogaster
Desset, S. ;
Vaury, C.
Cytogenet Genome Res 2005;110:209-214 (DOI:10.1159/000084954)
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Article (PDF 433 KB)
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215
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I elements in Drosophila: in vivo retrotransposition and regulation
Chambeyron, S. ;
Bucheton, A.
Cytogenet Genome Res 2005;110:215-222 (DOI:10.1159/000084955)
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Article (PDF 206 KB)
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223
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The structures of mouse and human L1 elements reflect their insertion mechanism
Martin, S.L. ;
Li, W-L.P. ;
Furano, A.V. ;
Boissinot, S.
Cytogenet Genome Res 2005;110:223-228 (DOI:10.1159/000084956)
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Article (PDF 332 KB)
Table (99.72 KB)
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229
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Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae
Grandbastien, M.-A. ;
Audeon, C. ;
Bonnivard, E. ;
Casacuberta, J.M. ;
Chalhoub, B. ;
Costa, A.-P.P. ;
Le, Q.H. ;
Melayah, D. ;
Petit, M. ;
Poncet, C. ;
Tam, S.M. ;
van Sluys, M.-A. ;
Mhiri, C.
Cytogenet Genome Res 2005;110:229-241 (DOI:10.1159/000084957)
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Article (PDF 1051 KB)
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242
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Host defenses to transposable elements and the evolution of genomic imprinting
McDonald, J.F. ;
Matzke, M.A. ;
Matzke, A.J.
Cytogenet Genome Res 2005;110:242-249 (DOI:10.1159/000084958)
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Article (PDF 206 KB)
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250
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APE-type non-LTR retrotransposons: determinants involved in target site recognition
Zingler, N. ;
Weichenrieder, O. ;
Schumann, G.G.
Cytogenet Genome Res 2005;110:250-268 (DOI:10.1159/000084959)
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Article (PDF 1606 KB)
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269
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Reverse transcriptase and integrase of the Saccharomyces cerevisiae Ty1 element
Wilhelm, F.-X. ;
Wilhelm, M. ;
Gabriel, A.
Cytogenet Genome Res 2005;110:269-287 (DOI:10.1159/000084960)
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Article (PDF 1057 KB)
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288
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Transfer RNA gene-targeted integration: an adaptation of retrotransposable elements to survive in the compact Dictyostelium discoideum genome
Winckler, T. ;
Szafranski, K. ;
Glöckner, G.
Cytogenet Genome Res 2005;110:288-298 (DOI:10.1159/000084961)
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Article (PDF 439 KB)
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299
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Competition between R1 and R2 transposable elements in the 28S rRNA genes of insects
Ye, J. ;
Pérez-González, C.E. ;
Eickbush, D.G. ;
Eickbush, T.H.
Cytogenet Genome Res 2005;110:299-306 (DOI:10.1159/000084962)
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Article (Fulltext)
Article (PDF 418 KB)
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Retrotransposable Elements and Gene Evolution
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307
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A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes
Brandt, J. ;
Veith, A.M. ;
Volff, J.-N.
Cytogenet Genome Res 2005;110:307-317 (DOI:10.1159/000084963)
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Article (PDF 1199 KB)
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318
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Human endogenous retroviruses: from infectious elements to human genes
de Parseval, N. ;
Heidmann, T.
Cytogenet Genome Res 2005;110:318-332 (DOI:10.1159/000084964)
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Article (PDF 502 KB)
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333
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Transposable elements donate lineage-specific regulatory sequences to host genomes
Mariño-Ramírez, L. ;
Lewis, K.C. ;
Landsman, D. ;
Jordan, I.K.
Cytogenet Genome Res 2005;110:333-341 (DOI:10.1159/000084965)
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Article (PDF 275 KB)
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342
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Impact of transposable elements on the evolution of mammalian gene regulation
Medstrand, P. ;
van de Lagemaat, L.N. ;
Dunn, C.A. ;
Landry, J.-R. ;
Svenback, D. ;
Mager, D.L.
Cytogenet Genome Res 2005;110:342-352 (DOI:10.1159/000084966)
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Article (PDF 346 KB)
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353
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Endogenous retroviruses and animal reproduction
Prudhomme, S. ;
Bonnaud, B. ;
Mallet, F.
Cytogenet Genome Res 2005;110:353-364 (DOI:10.1159/000084967)
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Article (PDF 631 KB)
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365
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Human retroelements may introduce intragenic polyadenylation signals
Roy-Engel, A.M. ;
El-Sawy, M. ;
Farooq, L. ;
Odom, G.L. ;
Perepelitsa-Belancio, V. ;
Bruch, H. ;
Oyeniran, O.O. ;
Deininger, P.L.
Cytogenet Genome Res 2005;110:365-371 (DOI:10.1159/000084968)
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Article (PDF 184 KB)
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Evolution of Retrotransposable Elements
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372
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Mobile genetic elements and sexual reproduction
Arkhipova, I.R.
Cytogenet Genome Res 2005;110:372-382 (DOI:10.1159/000084969)
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Article (PDF 313 KB)
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383
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Evolutionary forces generating sequence homogeneity and heterogeneity within retrotransposon families
Brookfield, J.F.Y.
Cytogenet Genome Res 2005;110:383-391 (DOI:10.1159/000084970)
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Article (PDF 179 KB)
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392
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Ribonuclease H evolution in retrotransposable elements
Malik, H.S.
Cytogenet Genome Res 2005;110:392-401 (DOI:10.1159/000084971)
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Article (PDF 668 KB)
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402
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The recent evolution of human L1 retrotransposons
Boissinot, S. ;
Furano, A.V.
Cytogenet Genome Res 2005;110:402-406 (DOI:10.1159/000084972)
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Article (PDF 163 KB)
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407
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Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents
Grahn, R.A. ;
Rinehart, T.A. ;
Cantrell, M.A. ;
Wichman, H.A.
Cytogenet Genome Res 2005;110:407-415 (DOI:10.1159/000084973)
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Article (PDF 271 KB)
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416
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SINE extinction preceded LINE extinction in sigmodontine rodents: implications for retrotranspositional dynamics and mechanisms
Rinehart, T.A. ;
Grahn, R.A. ;
Wichman, H.A.
Cytogenet Genome Res 2005;110:416-425 (DOI:10.1159/000084974)
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Article (PDF 273 KB)
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426
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Abundance, distribution and dynamics of retrotransposable elements and transposons: similarities and differences
Hua-Van, A. ;
Le Rouzic, A. ;
Maisonhaute, C. ;
Capy, P.
Cytogenet Genome Res 2005;110:426-440 (DOI:10.1159/000084975)
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Article (PDF 329 KB)
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441
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Comparative evolution history of SINEs in Arabidopsis thaliana and Brassica oleracea: evidence for a high rate of SINE loss
Lenoir, A. ;
Pélissier, T. ;
Bousquet-Antonelli, C. ;
Deragon, J.M.
Cytogenet Genome Res 2005;110:441-447 (DOI:10.1159/000084976)
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Article (PDF 190 KB)
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448
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Human endogenous retroviruses in the primate lineage and their influence on host genomes
Mayer, J. ;
Meese, E.
Cytogenet Genome Res 2005;110:448-456 (DOI:10.1159/000084977)
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Article (Fulltext)
Article (PDF 226 KB)
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Diversity of Retrotransposable Elements
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457
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Classification and nomenclature of retrotransposable elements
Capy, P.
Cytogenet Genome Res 2005;110:457-461 (DOI:10.1159/000084978)
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Article (PDF 128 KB)
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462
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Repbase Update, a database of eukaryotic repetitive elements
Jurka, J. ;
Kapitonov, V.V. ;
Pavlicek, A. ;
Klonowski, P. ;
Kohany, O. ;
Walichiewicz, J.
Cytogenet Genome Res 2005;110:462-467 (DOI:10.1159/000084979)
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Article (PDF 428 KB)
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468
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Genome-wide experimental identification and functional analysis of human specific retroelements
Buzdin, A. ;
Vinogradova, T. ;
Lebedev, Y. ;
Sverdlov, E.
Cytogenet Genome Res 2005;110:468-474 (DOI:10.1159/000084980)
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Article (PDF 324 KB)
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475
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SINEs and LINEs: symbionts of eukaryotic genomes with a common tail
Ohshima, K. ;
Okada, N.
Cytogenet Genome Res 2005;110:475-490 (DOI:10.1159/000084981)
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Article (PDF 758 KB)
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491
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Retrons, msDNA, and the bacterial genome
Lampson, B.C. ;
Inouye, M. ;
Inouye, S.
Cytogenet Genome Res 2005;110:491-499 (DOI:10.1159/000084982)
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Article (Fulltext)
Article (PDF 342 KB)
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500
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Transposable elements in mosquitoes
Boulesteix, M. ;
Biémont, C.
Cytogenet Genome Res 2005;110:500-509 (DOI:10.1159/000084983)
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Article (Fulltext)
Article (PDF 258 KB)
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510
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Penelope-like elements – a new class of retroelements: distribution, function and possible evolutionary significance
Evgen’ev, M.B. ;
Arkhipova, I.R.
Cytogenet Genome Res 2005;110:510-521 (DOI:10.1159/000084984)
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Article (PDF 385 KB)
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522
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Diversity and clustered distribution of retrotransposable elements in the compact genome of the pufferfish Tetraodon nigroviridis
Fischer, C. ;
Bouneau, L. ;
Coutanceau, J.-P. ;
Weissenbach, J. ;
Ozouf-Costaz, C. ;
Volff, J.-N.
Cytogenet Genome Res 2005;110:522-536 (DOI:10.1159/000084985)
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Article (PDF 564 KB)
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537
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The Alu Yc1 subfamily: sorting the wheat from the chaff
Garber, R.K. ;
Hedges, D.J. ;
Herke, S.W. ;
Hazard, N.W. ;
Batzer, M.A.
Cytogenet Genome Res 2005;110:537-542 (DOI:10.1159/000084986)
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Article (PDF 425 KB)
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543
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Phylogenomic analysis of chromoviruses
Gorinšek, B. ;
Gubenšek, F. ;
Kordiš, D.
Cytogenet Genome Res 2005;110:543-552 (DOI:10.1159/000084987)
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Article (PDF 4362 KB)
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553
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Abyss1: A novel L2-like non-LTR retroelement of the snakelocks anemone (Anemonia sulcata)
Greenwood, A.D. ;
Leib-Mösch, C. ;
Seifarth, W.
Cytogenet Genome Res 2005;110:553-558 (DOI:10.1159/000084988)
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Article (PDF 1381 KB)
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559
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Characterisation of pararetrovirus-like sequences in the genome of potato (Solanum tuberosum)
Hansen, C.N. ;
Harper, G. ;
Heslop-Harrison, J.S.
Cytogenet Genome Res 2005;110:559-565 (DOI:10.1159/000084989)
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Article (PDF 579 KB)
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566
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The evolution of transposons in Schizosaccharomyces pombe
Kelly, F.D. ;
Levin, H.L.
Cytogenet Genome Res 2005;110:566-574 (DOI:10.1159/000084990)
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Article (Fulltext)
Article (PDF 217 KB)
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Paper
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575
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DIRS-1 and the other tyrosine recombinase retrotransposons
Poulter, R.T.M. ;
Goodwin, T.J.D.
Cytogenet Genome Res 2005;110:575-588 (DOI:10.1159/000084991)
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Article (Fulltext)
Article (PDF 607 KB)
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Diversity of Retrotransposable Elements
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589
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Group II intron retroelements: function and diversity
Robart, A.R. ;
Zimmerly, S.
Cytogenet Genome Res 2005;110:589-597 (DOI:10.1159/000084992)
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Article (Fulltext)
Article (PDF 394 KB)
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Paper
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598
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A movable feast: diverse retrotransposons and their contribution to barley genome dynamics
Schulman, A.H. ;
Kalendar, R.
Cytogenet Genome Res 2005;110:598-605 (DOI:10.1159/000084993)
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Article (Fulltext)
Article (PDF 237 KB)
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Further Section
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606
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Author Index
Cytogenet Genome Res 2005;110:606-0 (DOI:10.1159/000087279)
Article (PDF 33 KB)
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607
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Contents Vol. 110, No. 1–4, 2005
Cytogenet Genome Res 2005;110:607-608 (DOI:10.1159/000087280)
Article (PDF 54 KB)
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