Cytogenetic and Genome Research 2007, Vol. 117, No. 1-4

Vol. 117, No. 1-4, 2007 July 2007
Also available as ISBN 978-3-8055-8338-1
Avian Genomics in Evolution, Agriculture and Health



Special Section
1	Title Page / Table of Contents Cytogenet Genome Res 2007;117:1-4 (DOI:10.1159/000106758) Article (PDF 85 KB) Free Access


5	Preface Smith, J. ; Nanda, I. Cytogenet Genome Res 2007;117:5-6 (DOI:10.1159/000103158) Article (PDF 39 KB) Free Access

Introduction
6	Avian genomics in the 21st century Burt, D.W. ; White, S.J. Cytogenet Genome Res 2007;117:6-13 (DOI:10.1159/000103159) Free Abstract Article (Fulltext) Article (PDF 257 KB)

Resources
14	The chicken RH map: current state of progress and microchromosome mapping Morisson, M. ; Denis, M. ; Milan, D. ; Klopp, C. ; Leroux, S. ; Bardes, S. ; Pitel, F. ; Vignoles, F. ; Gérus, M. ; Fillon, V. ; Douaud, M. ; Vignal, A. Cytogenet Genome Res 2007;117:14-21 (DOI:10.1159/000103160) Free Abstract Article (Fulltext) Article (PDF 243 KB)


22	A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination Wahlberg, P. ; Strömstedt, L. ; Tordoir, X. ; Foglio, M. ; Heath, S. ; Lechner, D. ; Hellström, A.R. ; Tixier-Boichard, M. ; Lathrop, M. ; Gut, I.G. ; Andersson, L. Cytogenet Genome Res 2007;117:22-29 (DOI:10.1159/000103161) Free Abstract Article (Fulltext) Article (PDF 253 KB) Free Supplementary Material (82 KB)


30	GEISHA: an in situ hybridization gene expression resource for the chicken embryo Darnell, D.K. ; Kaur, S. ; Stanislaw, S. ; Davey, S. ; Konieczka, J.H. ; Yatskievych, T.A. ; Antin, P.B. Cytogenet Genome Res 2007;117:30-35 (DOI:10.1159/000103162) Free Abstract Article (Fulltext) Article (PDF 272 KB)


36	Practicable approaches to facilitate rapid and accurate molecular cytogenetic mapping in birds and mammals Morris, W.B. ; Stephenson, J.E. ; Robertson, L.B.W. ; Turner, K. ; Brown, H. ; Ioannou, D. ; Tempest, H.G. ; Skinner, B.M. ; Griffin, D.K. Cytogenet Genome Res 2007;117:36-42 (DOI:10.1159/000103163) Free Abstract Article (Fulltext) Article (PDF 284 KB)

Cytogenetics
43	Chromosome repatterning in three representative parrots (Psittaciformes) inferred from comparative chromosome painting Nanda, I. ; Karl, E. ; Griffin, D.K. ; Schartl, M. ; Schmid, M. Cytogenet Genome Res 2007;117:43-53 (DOI:10.1159/000103164) Free Abstract Article (Fulltext) Article (PDF 591 KB)


54	Chromosomal mapping of chicken mega-telomere arrays to GGA9, 16, 28 and W using a cytogenomic approach Delany, M.E. ; Gessaro, T.M. ; Rodrigue, K.L. ; Daniels, L.M. Cytogenet Genome Res 2007;117:54-63 (DOI:10.1159/000103165) Free Abstract Article (Fulltext) Article (PDF 358 KB)


64	The evolution of the avian genome as revealed by comparative molecular cytogenetics Griffin, D.K. ; Robertson, L.B.W. ; Tempest, H.G. ; Skinner, B.M. Cytogenet Genome Res 2007;117:64-77 (DOI:10.1159/000103166) Free Abstract Article (Fulltext) Article (PDF 615 KB)

Evolution
78	Conserved synteny of mammalian imprinted genes in chicken, frog, and fish genomes Dünzinger, U. ; Haaf, T. ; Zechner, U. Cytogenet Genome Res 2007;117:78-85 (DOI:10.1159/000103167) Free Abstract Article (Fulltext) Article (PDF 890 KB)


86	ZP genes in avian species illustrate the dynamic evolution of the vertebrate egg envelope Hughes, D.C. Cytogenet Genome Res 2007;117:86-91 (DOI:10.1159/000103168) Free Abstract Article (Fulltext) Article (PDF 210 KB)


92	Different origins of bird and reptile sex chromosomes inferred from comparative mapping of chicken Z-linked genes Kawai, A. ; Nishida-Umehara, C. ; Ishijima, J. ; Tsuda, Y. ; Ota, H. ; Matsuda, Y. Cytogenet Genome Res 2007;117:92-102 (DOI:10.1159/000103169) Free Abstract Article (Fulltext) Article (PDF 590 KB)


103	A new look at the evolution of avian sex chromosomes Stiglec, R. ; Ezaz, T. ; Graves, J.A.M. Cytogenet Genome Res 2007;117:103-109 (DOI:10.1159/000103170) Free Abstract Article (Fulltext) Article (PDF 438 KB)


110	*Sequencing and genomic annotation of the chicken (Gallus gallus)* Hox clusters, and mapping of evolutionarily conserved regions** Richardson, M.K. ; Crooijmans, R.P.M.A. ; Groenen, M.A.M. Cytogenet Genome Res 2007;117:110-119 (DOI:10.1159/000103171) Free Abstract Article (Fulltext) Article (PDF 340 KB) Free Supplementary Material (1290 KB)


120	Molecular evolutionary genomics of birds Ellegren, H. Cytogenet Genome Res 2007;117:120-130 (DOI:10.1159/000103172) Free Abstract Article (Fulltext) Article (PDF 326 KB)

Gene Expression
131	*Global gene expression profile after Salmonella enterica* Serovar enteritidis challenge in two F8 advanced intercross chicken lines** Zhou, H. ; Lamont, S.J. Cytogenet Genome Res 2007;117:131-138 (DOI:10.1159/000103173) Free Abstract Article (Fulltext) Article (PDF 186 KB)


139	A functional genomics approach to the study of avian innate immunity Keeler, Jr, C.L. ; Bliss, T.W. ; Lavri, M. ; Maughan, M.N. Cytogenet Genome Res 2007;117:139-145 (DOI:10.1159/000103174) Free Abstract Article (Fulltext) Article (PDF 329 KB)

Gene Expressiomn
146	Evolutionary conservation of alternative splicing in chicken Katyal, S. ; Gao, Z. ; Liu, R.-Z. ; Godbout, R. Cytogenet Genome Res 2007;117:146-157 (DOI:10.1159/000103175) Free Abstract Article (Fulltext) Article (PDF 307 KB)

Gene Expression
158	Manipulation of small RNAs to modify the chicken transcriptome and enhance productivity traits Tizard, M.L.V. ; Moore, R.J. ; Lambeth, L.S. ; Lowenthal, J.W. ; Doran, T.J. Cytogenet Genome Res 2007;117:158-164 (DOI:10.1159/000103176) Free Abstract Article (Fulltext) Article (PDF 408 KB)


165	Avian sex determination: what, when and where? Smith, C.A. ; Roeszler, K.N. ; Hudson, Q.J. ; Sinclair, A.H. Cytogenet Genome Res 2007;117:165-173 (DOI:10.1159/000103177) Free Abstract Article (Fulltext) Article (PDF 477 KB)


174	Manipulation of thyroid status and/or GH injection alters hepatic gene expression in the juvenile chicken Wang, X. ; Carré, W. ; Saxton, A.M. ; Cogburn, L.A. Cytogenet Genome Res 2007;117:174-188 (DOI:10.1159/000103178) Free Abstract Article (Fulltext) Article (PDF 489 KB)

Immunology
189	Biotechnology and the chicken B cell line DT40 Bachl, J. ; Caldwell, R.B. ; Buerstedde, J.-M. Cytogenet Genome Res 2007;117:189-194 (DOI:10.1159/000103179) Free Abstract Article (Fulltext) Article (PDF 199 KB)


195	Genomics of antiviral defenses in the duck, a natural host of influenza and hepatitis B viruses MacDonald, M.R.W. ; Veniamin, S.M. ; Guo, X. ; Xia, J. ; Moon, D.A. ; Magor, K.E. Cytogenet Genome Res 2007;117:195-206 (DOI:10.1159/000103180) Free Abstract Article (Fulltext) Article (PDF 370 KB)


207	Avian genomics and the innate immune response to viruses Jenkins, K.A. ; Bean, A.G.D. ; Lowenthal, J.W. Cytogenet Genome Res 2007;117:207-212 (DOI:10.1159/000103181) Free Abstract Article (Fulltext) Article (PDF 304 KB)


213	Characterization of the turkey MHC chromosome through genetic and physical mapping Chaves, L.D. ; Krueth, S.B. ; Reed, K.M. Cytogenet Genome Res 2007;117:213-220 (DOI:10.1159/000103182) Free Abstract Article (Fulltext) Article (PDF 326 KB)


221	The avian immune genome - a glass half-full or half-empty? Kaiser, P. Cytogenet Genome Res 2007;117:221-230 (DOI:10.1159/000103183) Free Abstract Article (Fulltext) Article (PDF 261 KB)

Development
231	The chicken as a model for embryonic development Davey, M.G. ; Tickle, C. Cytogenet Genome Res 2007;117:231-239 (DOI:10.1159/000103184) Free Abstract Article (Fulltext) Article (PDF 323 KB)


240	Potential application of sperm bearing female-specific chromosome in chickens Shimada, K. ; Valdez Jr., M.B. ; Mizutani, M. ; Namikawa, T. Cytogenet Genome Res 2007;117:240-247 (DOI:10.1159/000103185) Free Abstract Article (Fulltext) Article (PDF 384 KB)


248	Low density lipoprotein receptor relatives in chicken ovarian follicle and oocyte development Schneider, W.J. Cytogenet Genome Res 2007;117:248-255 (DOI:10.1159/000103186) Free Abstract Article (Fulltext) Article (PDF 224 KB)


256	Left-right axis development: examples of similar and divergent strategies to generate asymmetric morphogenesis in chick and mouse embryos Schlueter, J. ; Brand, T. Cytogenet Genome Res 2007;117:256-267 (DOI:10.1159/000103187) Free Abstract Article (Fulltext) Article (PDF 571 KB)

Sequence Analysis
268	Characterising alternate splicing and tissue specific expression in the chicken from ESTs Tang, H. ; Heeley, T. ; Morlec, R. ; Hubbard, S.J. Cytogenet Genome Res 2007;117:268-277 (DOI:10.1159/000103188) Free Abstract Article (Fulltext) Article (PDF 452 KB) Free Supplementary Material (27 KB)


278	GOing from functional genomics to biological significance McCarthy, F.M. ; Bridges, S.M. ; Burgess, S.C. Cytogenet Genome Res 2007;117:278-287 (DOI:10.1159/000103189) Free Abstract Article (Fulltext) Article (PDF 330 KB)

Quantitative Trait Loci and Single Nucleotide Polymorphism
288	Identification of quantitative trait loci affecting shank length, body weight and carcass weight from the Japanese cockfighting chicken breed, Oh-Shamo (Japanese Large Game) Tsudzuki, M. ; Onitsuka, S. ; Akiyama, R. ; Iwamizu, M. ; Goto, N. ; Nishibori, M. ; Takahashi, H. ; Ishikawa, A. Cytogenet Genome Res 2007;117:288-295 (DOI:10.1159/000103190) Free Abstract Article (Fulltext) Article (PDF 260 KB)


296	Quantitative trait loci for bone traits segregating independently of those for growth in an F₂ broiler × layer cross Sharman, P.W.A. ; Morrice, D.R. ; Law, A.S. ; Burt, D.W. ; Hocking, P.M. Cytogenet Genome Res 2007;117:296-304 (DOI:10.1159/000103191) Free Abstract Article (Fulltext) Article (PDF 159 KB)


305	Parent-of-origin specific QTL - a possibility towards understanding reciprocal effects in chicken and the origin of imprinting Tuiskula-Haavisto, M. ; Vilkki, J. Cytogenet Genome Res 2007;117:305-312 (DOI:10.1159/000103192) Free Abstract Article (Fulltext) Article (PDF 259 KB)


313	Evidence for widespread epistatic interactions influencing Marek's disease virus viremia levels in chicken Cheng, H.H. ; Zhang, Y. ; Muir, W.M. Cytogenet Genome Res 2007;117:313-318 (DOI:10.1159/000103193) Free Abstract Article (Fulltext) Article (PDF 193 KB)


319	Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions Twito, T. ; Weigend, S. ; Blum, S. ; Granevitze, Z. ; Feldman, M.W. ; Perl-Treves, R. ; Lavi, U. ; Hillel, J. Cytogenet Genome Res 2007;117:319-326 (DOI:10.1159/000103194) Free Abstract Article (Fulltext) Article (PDF 357 KB)


327	Detection of agriculturally important QTLs in chickens and analysis of the factors affecting genotyping strategy Atzmon, G. ; Blum, S. ; Feldman, M. ; Lavi, U. ; Hillel, J. Cytogenet Genome Res 2007;117:327-337 (DOI:10.1159/000103195) Free Abstract Article (Fulltext) Article (PDF 243 KB)

Quantitative Traint Loci and Single Nucleotide Polymorphism
338	Extent of linkage disequilibrium in chicken Aerts, J. ; Megens, H.J. ; Veenendaal, T. ; Ovcharenko, I. ; Crooijmans, R. ; Gordon, L. ; Stubbs, L. ; Groenen, M. Cytogenet Genome Res 2007;117:338-345 (DOI:10.1159/000103196) Free Abstract Article (Fulltext) Article (PDF 830 KB) Free Supplementary Material (14 KB)

Genes and Longevity
346	Fanconi anemia: genetic analysis of a human disease using chicken system Takata, M. ; Kitao, H. ; Ishiai, M. Cytogenet Genome Res 2007;117:346-351 (DOI:10.1159/000103197) Free Abstract Article (Fulltext) Article (PDF 241 KB)


352	Neuroendocrine and immune characteristics of aging in avian species Ottinger, M.A. ; Lavoie, E. Cytogenet Genome Res 2007;117:352-357 (DOI:10.1159/000103198) Free Abstract Article (Fulltext) Article (PDF 155 KB)

Proteomics
358	Avian proteomics: advances, challenges and new technologies Doherty, M.K. ; McLean, L. ; Beynon, R.J. Cytogenet Genome Res 2007;117:358-369 (DOI:10.1159/000103199) Free Abstract Article (Fulltext) Article (PDF 492 KB)

Avian Viruses
370	Polymorphisms of the chicken antiviral MX gene Watanabe, T. Cytogenet Genome Res 2007;117:370-375 (DOI:10.1159/000103200) Free Abstract Article (Fulltext) Article (PDF 185 KB)


376	Genomics and Marek's disease virus Burnside, J. ; Morgan, R.W. Cytogenet Genome Res 2007;117:376-387 (DOI:10.1159/000103201) Free Abstract Article (Fulltext) Article (PDF 702 KB)


388	Modulation of macrophages by infectious bursal disease virus Khatri, M. ; Sharma, J.M. Cytogenet Genome Res 2007;117:388-393 (DOI:10.1159/000103202) Free Abstract Article (Fulltext) Article (PDF 209 KB)


394	Genesis of pandemic influenza Sorrell, E.M. ; Ramirez-Nieto, G.C. ; Gomez-Osorio, I.G. ; Perez, D.R. Cytogenet Genome Res 2007;117:394-402 (DOI:10.1159/000103203) Free Abstract Article (Fulltext) Article (PDF 1066 KB) Temporary free access Part of the Karger in focus: Influenza collection

Further Section
403	Author Index Vol. 117, 2007 Cytogenet Genome Res 2007;117:403-404 (DOI:10.1159/000106759) Article (PDF 38 KB) Free Access


405	Contents Vol. 117, 2007 Cytogenet Genome Res 2007;117:405-406 (DOI:10.1159/000106760) Article (PDF 115 KB) Free Access

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